Cookie Warning
This site uses cookies. Only cookies essential for site operation are used. These cookies prevent cross-site request forgery attacks, keep track of sessions and are deleted when the session ends.
Changelog
Platform updates
2026-06 — DeepGO-PlusPlus-Light, predictor API & SPARQL, new look
- New model DeepGO-PlusPlus-Light — a multi-evidence ensemble (DIAMOND, STRING-Net, a hierarchy-aware CNN, ESM2-35M embedding kNN and hierarchy-aware head, ProteInfer) selectable on the Prediction page, with each component's own output shown on the result page.
- New predictor-aware REST endpoint
/deepgo/api/predict(takes apredictorfield and returns per-component substreams); the original/deepgo/api/createis unchanged. - New SPARQL functions
dg:predictanddg:componentson the SPARQL endpoint, in addition to the unchangeddg:deepgo. - Result pages now show only the most specific GO terms by default (redundant ancestors hidden; full set kept in the JSON/CSV export), and obsolete predicted terms are transferred to their replacements.
- Modernised the website (Bootstrap 5) and refreshed the security dependencies.
DeepGOPlus releases
Version 1.0.28
Date: 2026-06-14
The current version release is 1.0.28. The model in the current release was trained using the Gene Ontology released on 2026-05-19 and the SwissProt data with version 2026_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.664 | 10.055 | 0.665 |
| BPO | 0.525 | 40.235 | 0.485 |
| CCO | 0.698 | 10.001 | 0.738 |
Version 1.0.27
Date: 2026-02-03
The current version release is 1.0.27. The model in the current release was trained using the Gene Ontology released on 2026-01-23 and the SwissProt data with version 2026_01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.658 | 10.220 | 0.661 |
| BPO | 0.525 | 40.485 | 0.485 |
| CCO | 0.694 | 10.571 | 0.733 |
Version 1.0.26
Date: 2025-11-10
The current version release is 1.0.26. The model in the current release was trained using the Gene Ontology released on 2025-10-10 and the SwissProt data with version 2025_04.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.660 | 9.871 | 0.662 |
| BPO | 0.519 | 39.644 | 0.483 |
| CCO | 0.687 | 10.321 | 0.720 |
Version 1.0.25
Date: 2025-06-29
The current version release is 1.0.25. The model in the current release was trained using the Gene Ontology released on 2025-06-01 and the SwissProt data with version 2025_03.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.666 | 9.769 | 0.666 |
| BPO | 0.517 | 39.774 | 0.481 |
| CCO | 0.687 | 10.327 | 0.719 |
Version 1.0.24
Date: 2025-05-21
The current version release is 1.0.24. The model in the current release was trained using the Gene Ontology released on 2025-03-16 and the SwissProt data with version 2025_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.654 | 10.106 | 0.652 |
| BPO | 0.528 | 39.455 | 0.490 |
| CCO | 0.691 | 10.128 | 0.728 |
Version 1.0.23
Date: 2025-02-18
The current version release is 1.0.23. The model in the current release was trained using the Gene Ontology released on 2025-02-06 and the SwissProt data with version 2025_01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.664 | 9.965 | 0.674 |
| BPO | 0.525 | 40.109 | 0.493 |
| CCO | 0.684 | 10.547 | 0.723 |
Version 1.0.22
Date: 2024-12-10
The current version release is 1.0.22. The model in the current release was trained using the Gene Ontology released on 2024-11-03 and the SwissProt data with version 2024_06.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.661 | 10.280 | 0.666 |
| BPO | 0.520 | 41.842 | 0.482 |
| CCO | 0.689 | 10.530 | 0.725 |
Version 1.0.21
Date: 2024-10-13
The current version release is 1.0.21. The model in the current release was trained using the Gene Ontology released on 2024-09-08 and the SwissProt data with version 2024_05.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.663 | 9.792 | 0.665 |
| BPO | 0.512 | 40.259 | 0.474 |
| CCO | 0.690 | 10.127 | 0.728 |
Version 1.0.20
Date: 2024-08-15
The current version release is 1.0.20. The model in the current release was trained using the Gene Ontology released on 2024-06-17 and the SwissProt data with version 2024_04.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.666 | 9.566 | 0.671 |
| BPO | 0.520 | 40.647 | 0.480 |
| CCO | 0.685 | 10.456 | 0.718 |
Version 1.0.19
Date: 2024-06-02
The current version release is 1.0.19. The model in the current release was trained using the Gene Ontology released on 2024-04-24 and the SwissProt data with version 2024_03.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.665 | 10.084 | 0.665 |
| BPO | 0.517 | 41.759 | 0.478 |
| CCO | 0.685 | 10.835 | 0.719 |
Version 1.0.18
Date: 2024-04-03
The current version release is 1.0.18. The model in the current release was trained using the Gene Ontology released on 2024-01-17 and the SwissProt data with version 2024_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.663 | 9.736 | 0.676 |
| BPO | 0.534 | 41.360 | 0.499 |
| CCO | 0.687 | 10.863 | 0.726 |
Version 1.0.17
Date: 2024-01-30
The current version release is 1.0.17. The model in the current release was trained using the Gene Ontology released on 2024-01-17 and the SwissProt data with version 2024_01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.664 | 10.134 | 0.668 |
| BPO | 0.530 | 42.020 | 0.491 |
| CCO | 0.688 | 10.551 | 0.729 |
Version 1.0.16
Date: 2023-11-27
The current version release is 1.0.16. The model in the current release was trained using the Gene Ontology released on 2023-11-15 and the SwissProt data with version 2023_05.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.668 | 9.815 | 0.672 |
| BPO | 0.524 | 41.975 | 0.491 |
| CCO | 0.687 | 10.519 | 0.723 |
Version 1.0.15
Date: 2023-09-25
The current version release is 1.0.15. The model in the current release was trained using the Gene Ontology released on 2023-07-27 and the SwissProt data with version 2023_04.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.668 | 9.949 | 0.672 |
| BPO | 0.533 | 42.311 | 0.497 |
| CCO | 0.687 | 10.738 | 0.724 |
Version 1.0.14
Date: 2023-08-28
The current version release is 1.0.14. The model in the current release was trained using the Gene Ontology released on 2023-07-27 and the SwissProt data with version 2023_03.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.667 | 9.740 | 0.673 |
| BPO | 0.525 | 42.537 | 0.491 |
| CCO | 0.688 | 10.663 | 0.726 |
Version 1.0.13
Date: 2023-05-20
The current version release is 1.0.13. The model in the current release was trained using the Gene Ontology released on 2023-05-10 and the SwissProt data with version 2023_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.660 | 10.368 | 0.659 |
| BPO | 0.522 | 43.263 | 0.485 |
| CCO | 0.687 | 10.940 | 0.726 |
Version 1.0.12
Date: 2023-05-18
The current version release is 1.0.12. The model in the current release was trained using the Gene Ontology released on 2023-04-01 and the SwissProt data with version 2023_01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.655 | 9.765 | 0.657 |
| BPO | 0.526 | 43.665 | 0.495 |
| CCO | 0.685 | 10.383 | 0.720 |
Version 1.0.11
Date: 2023-02-27
The current version release is 1.0.11. The model in the current release was trained using the Gene Ontology released on 2023-01-01 and the SwissProt data with version 2022_05.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.653 | 10.171 | 0.646 |
| BPO | 0.522 | 43.556 | 0.479 |
| CCO | 0.682 | 10.746 | 0.716 |
Version 1.0.10
Date: 2022-11-06
The current version release is 1.0.10. The model in the current release was trained using the Gene Ontology released on 2022-10-07 and the SwissProt data with version 2022_04.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.665 | 10.131 | 0.672 |
| BPO | 0.543 | 41.790 | 0.510 |
| CCO | 0.685 | 10.655 | 0.723 |
Version 1.0.9
Date: 2022-11-01
The current version release is 1.0.9. The model in the current release was trained using the Gene Ontology released on 2022-05-16 and the SwissProt data with version 2022_03.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.653 | 10.179 | 0.657 |
| BPO | 0.529 | 42.128 | 0.498 |
| CCO | 0.684 | 10.852 | 0.725 |
Version 1.0.8
Date: 2022-10-21
The current version release is 1.0.8. The model in the current release was trained using the Gene Ontology released on 2022-05-16 and the SwissProt data released on 2022_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.652 | 10.465 | 0.649 |
| BPO | 0.536 | 44.204 | 0.500 |
| CCO | 0.693 | 10.882 | 0.731 |
Version 1.0.7
Date: 2022-10-21
The current version release is 1.0.7. The model in the current release was trained using the Gene Ontology released on 2022-01-13 and the SwissProt data released on 2022_01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.652 | 10.600 | 0.649 |
| BPO | 0.529 | 43.569 | 0.498 |
| CCO | 0.698 | 10.732 | 0.738 |
Version 1.0.6
Date: 2022-10-21
The current version release is 1.0.6. The model in the current release was trained using the Gene Ontology released on 2021-10-26 and the SwissProt data released on 2021_04.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.664 | 9.591 | 0.671 |
| BPO | 0.530 | 44.370 | 0.496 |
| CCO | 0.695 | 10.442 | 0.738 |
Version 1.0.5
Date: 2022-10-21
The current version release is 1.0.5. The model in the current release was trained using the Gene Ontology released on 2021-07-02 and the SwissProt data released on 2021_03.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.665 | 9.590 | 0.671 |
| BPO | 0.526 | 44.749 | 0.492 |
| CCO | 0.693 | 10.415 | 0.734 |
Version 1.0.4
Date: 2022-10-16
The current version release is 1.0.4. The model in the current release was trained using the Gene Ontology released on 2021-02-01 and the SwissProt data released on 2021_02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.664 | 9.955 | 0.661 |
| BPO | 0.524 | 44.286 | 0.492 |
| CCO | 0.687 | 10.453 | 0.729 |
Version 1.0.3
Date: 2021-02-14
The current version release is 1.0.3. The model in the current release was trained using the Gene Ontology released on 2021-02-01 and the SwissProt data released on 2021-02-10.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.647 | 10.186 | 0.644 |
| BPO | 0.531 | 44.297 | 0.494 |
| CCO | 0.685 | 10.476 | 0.723 |
Version 1.0.2
Date: 2021-02-14
The current version release is 1.0.2. The model in the current release was trained using the Gene Ontology released on 2020-12-08 and the SwissProt data released on 2020-12-02.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.650 | 10.139 | 0.644 |
| BPO | 0.528 | 44.025 | 0.492 |
| CCO | 0.682 | 10.497 | 0.719 |
Version 1.0.1
Date: 2020-12-07
The model in the current release was trained using the Gene Ontology released on 2020-10-09 and the SwissProt data released on 2020-10-07.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.650 | 6.478 | 0.642 |
| BPO | 0.518 | 31.828 | 0.454 |
| CCO | 0.698 | 7.780 | 0.722 |
Version 1.0.0
Date: 2018-07-07
The model in this release was trained using the Gene Ontology released on 2016-01-16 and the SwissProt data released on 2016-01-01.
The obtained results are the following:
| Fmax | Smin | AUPR | |
|---|---|---|---|
| MFO | 0.544 | 8.724 | 0.487 |
| BPO | 0.469 | 22.573 | 0.404 |
| CCO | 0.623 | 7.823 | 0.627 |
DeepGOWeb byBORG.
This website is free and open to all and there is no login requirement.
DeepGO-PlusPlus-Light releases
Version v2.0-light
Date: 2026-07-08
DeepGO-PlusPlus-Light v2.0-light is the DeepGOWeb v2 model release for protein and genome-scale annotation. It combines DIAMOND homology transfer, STRING-Net neighborhood evidence, a hierarchy-aware CNN over the Gene Ontology, ESM2-35M embedding kNN and head predictions, and ProteInfer in a learned per-aspect ensemble.
- Default display threshold: 0.5 for DG++Light.
- Protein results include per-component prediction streams and can be downloaded as JSON, CSV, or RDF/Turtle.
- Genome examples use the same release through DeepGO-GSPA; gene calling is limited to prokaryotic genomes unless GFF3/proteins are supplied.
- Release notes are stored with the archived model directory so retraining creates a new changelog entry by rerunning
loadrelease.